Script SAMSON using Python. Model and simulate from scripts. Pipeline calculations. Integrate Python packages for machine learning and more.
The Python Scripting extension exposes the SAMSON API in Python and provides a Jupyter Qt console embedded in SAMSON. This allows you to script almost everything in Python, create pipelines, and integrate Python packages for deep learning, bioinformatics, statistics, visualization, and more.
Documentation
Please refer to the Python Scripting Guide for more information on prerequisites, installation, and tutorials.
What's new
See changelog.
Python Scripting is an extension for SAMSON,
the integrative platform for molecular design.
To use Python Scripting:
When you restart SAMSON, the extension will be automatically installed
and will be usable directly from within SAMSON.