Protein Path Search

OneAngstrom

Updated: Mar 13, 2019


857
243
1

Free extension

Free
No credit card required
Add

Protein Path Search

OneAngstrom

Updated: Mar 13, 2019


857
243
1
Find protein conformational transition paths within minutes with the newly developed ART-RRT method.

Documentation

Please refer to the Protein conformational transition search tutorial.

Note: for an extended version, please refer to the Protein Path Finder app.

References

If you use this app, please cite:

M. K. Nguyen, L. Jaillet and S. Redon. Generating conformational transition paths with low potential-energy barriers for proteins. Journal of Computer-Aided Molecular Design. Journal of Computer-Aided Molecular Design. 2018 Aug;32(8):853-867.
Protein Path Search is an extension for SAMSON,
the integrative platform for molecular design.

To use Protein Path Search:

1. Create your free account and choose a molecular design plan
2. Download and install SAMSON on your computer
3. Come back to this page to add the extension to your account


When you restart SAMSON, the extension will be automatically installed
and will be usable directly from within SAMSON.

Related extensions

P-NEB
Lennard-Jones model
Rotamers editor
ARAP Interpolator
Symmetry Mate Editor
Pathlines
PDBFixer